Detection of tuberculosis (TB) using gold standard method, direct sputum smears microscopy, PCR, qPCR and electrochemical DNA sensor: A mini review

Authors

  • Che Engku Noramalina Che-Engku-Chik Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM SERDANG, Selangor, Malaysia.
  • Nor Azah Yusof Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia.
  • Jaafar Abdullah Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia.
  • Siti Sarah Othman Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM SERDANG, Selangor, Malaysia.
  • Mohd Hazani Mat Said Institute of Advanced Technology, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
  • Helmi Wasoh Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM SERDANG, Selangor, Malaysia.

DOI:

https://doi.org/10.54987/jobimb.v4i2.305

Keywords:

Tuberculosis, acid fast bacilli staining, electrochemical DNA sensor, polymerase chain reaction, quantitative polymerase chain reaction

Abstract

Despite the continued effort globally made to control the growing case of Tuberculosis (TB), it continues to be regarded as the second deadliest disease after the HIV. There are various methods developed to diagnose TB, most of which having the criteria of sensitive, selective, cheap and portable to be used in robust applications. Even with the advancement in medication, the important keys including early stage diagnosis is yet to be considered. In diagnosing TB, the only technique remained as the gold standard method is the culturing method, which is the Acid Fast Bacilli (AFB) staining. On the other hand, molecular technique utilising Polymerase Chain Reaction (PCR) assay is preferred as a non-culturing method. Additionally, as molecular techniques become advanced, real-time PCR or quantitative PCR (qPCR) using multiple probes in one shot has raised interest among researchers, because it can skip the process of gel electrophoresis. Recently, researchers have been working on electrochemical DNA sensors which are sensitive, selective, rapid, cheap and can meet with point of care (POC) testing requirements to diagnose TB.

References

World Health Organization. 2015. Global Tuberculosis Report, World Health Organization. http://www.who.int/tb/publications/global_report/en/, accessed 24.1.16

Zhou L, He X, He D, Wang K, Qin D. Biosensing technologies for Mycobacterium tuberculosis detection: status and new developments. Clin Dev Immunol. 2011;8 pages.

Ryu YJ. Diagnosis of pulmonary tuberculosis: recent advances and diagnostic algorithms. Tuberculosis Resp Dis. 2015;78(2):64-71.

Cross LJ, Anscombe C, McHugh TD, Abubakar I, Shorten RJ, Thorne, N., et al. A rapid and sensitive diagnostic screening assay for detection of mycobacteria including Mycobacterium tuberculosis directly from sputum without extraction. Int J Bacteriol. 2015;8 pages

Kritski AL, Huf G, Oliveira MM, Squire SB, Ruffino-Netto A. Assessing new strategies for TB diagnosis in low-and middle-income countries. Brazillian J Infect Dis. 2014;17:211-217.

Lunawat PP, Mhapuskar AA, Ganvir SM, Hazarey VK, Mhapuskar MA, Kulkarni D. Detection of acid fast bacilli in saliva using papanicolaou stain induced fluorescence method versus fluorochrome staining: An evaluative study. J Int. Oral Health, 2015;7(7):115.

Tiwari S, Nataraj G, Kanade S, Mehta P. Diagnosis of pediatric pulmonary tuberculosis with special reference to polymerase chain reaction based nucleic acid amplification test. Int J Mycobacteriol. 2015:4(1):48-53.

Sales ML, Fonseca Júnior AA, Orzil L, Alencar AP, Silva MR, Issa MA, et al. Validation of a real-time PCR assay for the molecular identification of Mycobacterium tuberculosis. Brazilian J Microbiol. 2014;45(4):1362-1369.

Zaffino RL, Galan T, Pardo WA, Mir M, Samitier J. Nanoprobes for enhanced electrochemical DNA sensors. Wiley Interdisciplinary..Rev:..Nanomedicine..Nanobiotechnol. 2015;7(6):817-827.

Asmar S, Drancourt M. Chlorhexidine decontamination of sputum for culturing Mycobacterium tuberculosis. BioMed Central Microbiol. 2015;15(1):155.

Centers for Disease Control and Prevention (CDC). (2016). Testing & Diagnosis. http://www.cdc.gov/tb /topic/testing/default.htm, accessed 25.1.16

Todar K. 2012. Todar's Online Textbook of Bacteriology: Mycobacterium tuberculosis and Tuberculosis. http://textbookofbacteriology.net/tuberculosis.html, accessed 12.12.15

Central TB Divisions. 2009. Revised National TB Control TB Programme Training Manual for Mycobacterium tuberculosis Culture & Drug susceptibility testing. Nirman Bhawan, New Delhi

Uddin MKM, Chowdhury MR, Ahmed S, Rahman MT, Khatun R, van Leth F, et al. Comparison of direct versus concentrated smear microscopy in detection of pulmonary tuberculosis. BioMed Central Research Notes. 2013;6(1):291.

Tankeshwar A. 2015. Auramine-Rhodamine Fluorochrome Staining: Principle, Procedure, Results and Limitations. http://microbeonline.com/auramine-rhodamine-fluorochrome-staining-principle-procedure-results-limitations/. accessed 17.3.16

Dezemon Z, Muvunyi CM, Jacob O. Staining techniques for detection of acid fast bacilli: what hope does fluorescein-diacetate (FDA) vitality staining technique represent for the monitoring of tuberculosis treatment in resource limited settings. Trends in Bacteriol. 2014;1(1):1.

Tankeshwar A. 2015. Ziehl-Neelsen technique (AFB Staining): Principle, Procedure and Reporting. http://microbeonline.com/ziehl-neelsen-technique-principle-procedure-reporting/, accessed 19.3.16

Singhal R, Myneedu VP. Microscopy as a diagnostic tool in pulmonary tuberculosis. Int J Mycobacteriol. 2015;4(1):1-6.

Norin J. 2015. A retrospective evaluation study of diagnostic accuracy of Xpert® MTB/RIF assay, used for detection of Mycobacterium tuberculosis in Greece. http://www.diva-portal.se/smash/get/diva2:825390/fulltext01.pdf, accessed 13.1.16

Nyaruhirira AU, Toussaint M, Nemser B, Vandebriel G, Gasana M, Amor YB. Performance of LED fluorescence microscopy for the detection of tuberculosis in Rwanda using Zeiss Primo Star. Pan Afr Med J. 1937;21(1).

Fandinho FC, Orsi-Souza AT, Salem JI. A comparison of the Ziehl-Neelsen and Kinyoun methods in staining smears from leprosy patients. Int. J Lepr Other Mycobac Dis. 1990;58(2):389.

Sawadogo TL, Savadogo LGB, Diande S, Ouedraogo F, Mourfou A, Gueye A, et al. Performance comparison colorations Kinyoun and Auramine O, with the Ziehl-Neelsen for the diagnosis of tuberculosis in National Tuberculosis Centre Burkina Faso. Trop Health Med. 2012;22(3):302-306.

Van Deun A, Chuquiyauri R, Torrea G, Agapito J, Verdonck K, Gotuzzo E. Yield of fluorescence microscopy versus culture for tuberculosis at a middle-income country referral hospital. Trans R Soc Trop Med Hyg. 2008;102:564-569.

Jagadeesha K, Vidya P. A comparative study of fluorescent staining and Ziehl Neelsen's staining for detection of acid fast bacilli in sputum in a tertiary care hospital in Mangalore. Int J Microbiol Parasitol. 2015;1:3-5.

Carniel, F, Dalla Costa ER, Lima-Bello G, Martins C, Scherer LC, Rossetti ML. Use of conventional PCR and smear microscopy to diagnose pulmonary tuberculosis in the Amazonian rainforest area. Brazilian J Med Biol Res. 2014; 47:1016-1020.

Lyra JMAD, Maruza M, Verza M, Carneiro MM, Albuquerque MDFMD, Rossetti ML, et al. Evaluation of four molecular methods for the diagnosis of tuberculosis in pulmonary and blood samples from immunocompromised patients. Mem Inst Oswaldo Cruz. 2014;109:805-813.

Tortoli E, Urbano P, Marcelli F, Simonetti TM, Cirillo DM. Is real-time PCR better than conventional PCR for Mycobacterium tuberculosis complex detection in clinical samples? J Clin Microbiol. 2012;50:2810-2813.

Kivihya-Ndugga L, van Cleeff M, Juma E, Kimwomi J, Githui W, Oskam L, et al. Comparison of PCR with the routine procedure for diagnosis of tuberculosis in a population with high prevalence of tuberculosis and human immunodeficiency virus. J Clin Microbiol. 2004;42:1012-1015.

Saxena P, Asthana AK, Madan M. Comparison of microscopy and PCR in detection of Mycobacterium tuberculosis. J Microbiol Infect Dis. 2014;4:141-144.

Gholoobi A, Masoudi-Kazemabad A, Meshkat M, Meshkat Z. Comparison of culture and PCR methods for diagnosis of Mycobacterium tuberculosis in different clinical specimens. Jundishapur J Microbiol. 2014;7:1-6.

Kox LF, Rhienthong D, Miranda AM, Udomsantisuk N, Ellis K, Van Leeuwen. J. et al. A more reliable PCR for detection of Mycobacterium tuberculosis in clinical samples. J Clin Microbiol. 1994;32:672-678.

Kim SW, Kim SI, Lee SJ, Lee JH, Ryu YJ, Shim SS. et al. The effectiveness of real-time PCR assay, compared with microbiologic results for the diagnosis of pulmonary tuberculosis. Tuberc Respir Dis. 2015;78:1-7.

Nagdev KJ, Kashyap RS, Bhullar SS, Purohit HJ, Taori GM, Daginawala HF. Comparison of real-time PCR and conventional PCR assay using IS 6110 region of Mycobacterium tuberculosis for efficient diagnosis of tuberculous meningitis and pulmonary tuberculosis. Indian J Biotechnol. 2015;14:94-100.

Haron S, Issa R, Sidik NM, Zin NM. The usefulness of PCR amplification for direct detection of Mycobacterium tuberculosis DNA from clinical samples. Biotechnol. 2008;7:100-105.

Park SH, Kim CK, Jeong HR, Son H, Kim SH, Park MS. Evaluation and comparison of molecular and conventional diagnostic tests for detecting tuberculosis in Korea, 2013. Osong Public Heal Res Perspect. 2014;5:S3-S7.

Zhou L, He X, He D, Wang K, Qin D. Biosensing technologies for Mycobacterium tuberculosis detection: status and new developments. Clin Dev Immunol. 2011;2011:8 pp.

Sin ML, Mach KE, Wong PK, Liao JC. Advances and challenges in biosensor-based diagnosis of infectious diseases. Expert Rev Mol Diagn. 2014;14:225-244.

Shivashankar M, Vinodini VR, Mishra P, Uma K. Applications of implantable medical sensors for heart faliure: A review. Int J Pharm Pharm Sci. 2014;6:1-5.

Abu-Salah KM, Zourob MM, Mouffouk F, Alrokayan SA, Alaamery MA, Ansari AA. DNA-based nanobiosensors as an emerging platform for detection of disease. Sensors. 2015;15:14539-14568.

Wasoh H, Yook Heng L, Abu Bakar F, Wagiran R, Bakar Salleh A, Azah Yusof N, Hazimah Abdul Rahman F. A simple capacitive biosensor device for histamine measurement. Sensor Rev. 2012;32:245-250.

Yang X, Wang L, Zhou G, Sui N, Gu Y, Wan J. Electrochemical detection of H2O2 based on Fe3O4 nanoparticles with graphene oxide and polyamidoamine dendrimer. J Clust Sci. 2015;26:789-798.

Liu C, Jiang D, Xiang G, Liu L, Liu F, Pu X. An electrochemical DNA biosensor for sensitive Mycobacterium tuberculosis detection based on signal amplification of graphene and gold nanoparticles-polyaniline nanocomposite. Analyst. 2014;21:5460-5465.

Lorenz TC. Polymerase chain reaction: basic protocol plus troubleshooting and optimization strategies. J Vis Exp. 2012;63:e3998.

Hu Y, Fenghua L, Han D, Niu L. Biocompatible Graphene for Bioanalytical Applications. Springer, Heidelberg, 2015.

Devi RV, Doble M, Verma RS. Nanomaterials for early detection of cancer biomarker with special emphasis on gold nanoparticles in immunoassays/sensors. Biosens Bioelectron. 2015;68:688-698.

Torati SR, Reddy V, Yoon SS, Kim C. Electrochemical biosensor for Mycobacterium tuberculosis DNA detection based on gold nanotubes array electrode platform. Biosens Bioelectron. 2016;78:483-488.

Nurmalasari R, Gaffar S, Hartati YW. Label-free electrochemical DNA biosensor for the detection of Mycobacterium tuberculosis using gold electrode modified by self-assembled monolayer of thiol. Procedia Chem. 2015;17:111-117.

Downloads

Published

30.12.2016

How to Cite

Che-Engku-Chik, C. E. N., Yusof, N. A., Abdullah, J., Othman, S. S., Said, M. H. M., & Wasoh, H. (2016). Detection of tuberculosis (TB) using gold standard method, direct sputum smears microscopy, PCR, qPCR and electrochemical DNA sensor: A mini review. Journal of Biochemistry, Microbiology and Biotechnology, 4(2), 16–21. https://doi.org/10.54987/jobimb.v4i2.305

Issue

Section

Articles