Characterization of A Diesel-Degrading Strain Isolated From A Local Hydrocarbon-Contaminated Site
DOI:
https://doi.org/10.54987/jebat.v1i1.24Keywords:
Isolationï€»ï€ Characterization, Diesel-degrading, Serratia spAbstract
A diesel-degrading bacterium has been isolated from a primary school soil. The isolate was tentatively identified as Serratia sp. Strain DRY5 based on the carbon utilization profiles using Biolog GN plates and partial 16S rDNA molecular phylogeny. Isolate 5 showed an increase cellular growth with respect to diesel concentrations from 0% until 2% where the optimum growth occurring at 2% (v/v) diesel concentration and was able to tolerate up to 8% (v/v) diesel. Based on the optimization studies using different nitrogen sources, Ammonium chloride proved to be the best nitrogen source. Ammonium chloride was optimum at 7.7 gl-1 and concentrations higher than that resulted with inhibiton of the cellular growth. The optimal temperature and the optimal pH that supported the growth of this bacterium was between 23 to 40 oC and pH 7.5 to pH 8.5 respectively. Diesel components was proven to be completely removed from the reduction in the hydrocarbon peaks monitored by Solid Phase Microextraction Gas Chromatography analysis after 7 days of incubation.All of these characteristics suggest that this bacterium is the right bacterium for bioremediation of diesel spills and pollution in the tropics.
References
Altschul, S.F., W. Gish, W. Miller, E.W. Myers and D.J. Lipman: Basic local alignment search tool. J. Mol. Biol., 215(3), 403-410 (1990).
Atlas R.M. and C.E. Cerniglia: Bioremediation of petroleum pollutants. Bioscience, 45(5),1-10 (1995).
Bento, F.M., Camargo, F.A.O, Okeke, B.C., and Frankenberger, W.T.: 2005, ‘Comparative bioremediation of soils contaminated with diesel oil by natural attenuation, biostimulation and bioaugmentation,’ Bioresour. Technol. 96, 1049 – 1055.
Berita Harian Online: 150 tonnes of diesel spilled in the Straits of Malacca. 6 August (1997).
Bicca F.C, L.C. Fleck, M. Antonio and Z. Ayub: Production of biosurfactant by hydrocarbon degrading Rhodococcus ruber and Rhodococcus erythropolis. Rev. Microbiol., 30, 231-236 (1999).
Cavalca L., P.D. Gennaro, M. Colombo, V. Andreoni, S. Bernasconi, I. Ronco and G. Bestetti: Distribution of catabolic pathways in some hydrocarbon-degrading bacteria from a subsurface polluted soil. Resour. Microbiol., 151, 877-887 (2000).
Chayabutra, C. and L.K. Ju: Degradation of n-hexadecane and its metabolites by Pseudomonas aeruginosa under microaerobic and anaerobic denitrifying conditions. Appl. Environ. Microbiol., 66(2), 493-498 (2000).
Chapman, P.J. and M. Shelton: Fossil fuel biodegradation, laboratory studies. Environ. Health Perspect. Suppl., 1035, 1-7 (1995).
Claassens, S., L. Van Rensburg, K.J. Riedel, J.J. Bezuidenhout and P.J.J. Van Rensburg: Evaluation of the efficiency of various commercial products for the bioremediation of hydrocarbon contaminated soil. Environmentalist, 26(1), 51-62 (2006).
Davey, K.R.: Review paper, modelling the combined effect of temperature and pH on the rate coefficient for bacterial growth. Int. J. Food Microbiol., 23, 295-303 (1994).
Devereux, R., and S.S. Wilkinson: Amplification of ribosomal RNA sequences. In: Molecular microbial ecology manual, 2nd ed. (Eds.: G.A. Kowalchuk, F.J. de Brujin, I.M. Head, A.D.L. Akkermans and J.D. van Elsas. Kluwer Academic Publishers, Dordrecht, The Netherlands. pp. 509-522 (2004).
DOE: Malaysia Environmental Quality Report 2006, Department of Environment, Ministry of Natural Resources and Environment, Malaysia. ISSN 0127-6433 (2007).
Eriksson, M., A. Swartling and G. Dalhammar: Biological degradation of diesel fuel in water and soil monitored with solid-phase microextraction and GC-MS. Appl. Microbiol. Biotechnol., 50,129-134 (1998).
Espeche, M.E., W.P. MacCormack and E.R. Fraile: Factors affecting growth of an n-hexadecane degrader Acinetobacter species isolated from a highly polluted urban river. Int. Biodeterior. Biodegrad., 33(2), 187-196 (1994).
Felsenstein, J.: Confidence limits on phylogenies, an approach using the bootstrap. Evolution., 39, 783–791 (1985).
Finnerty, W.R.: The biochemistry of microbial alkane oxidation, new insights and perspectives. Trends Biochem. Sci., 2, 73-75 (1977).
Ghazali, F.M., R.N.Z.A. Rahman, A.B. Salleh and M. Basri: Biodegradation of hydrocarbons in soil by microbial consortium. Int. Biodeter. Biodegrad., 54, 61-67 (2004).
Hong, J.H., J. Kim, O.K. Choi, K.S. Cho and H.W. Ryu: Characterization of a diesel-degrading bacterium, Pseudomonas aeruginosa IU5, isolated from oil-contaminated soil in Korea. World J. Microbiol. Biotechnol., 21(3), 381-384 (2005).
Kimura, M.A.: Simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111–120 (1980).
Kwapisz, E., J. Wszelaka, O. Marchut and S. Bielecki: The effect of nitrate and ammonium ions on kinetics of diesel oil degradation by Gordonia alkanivorans S7. Int. Biodeterior. Biodegrad., 61, 214–222 (2008).
Lee, M., M.K. Kim, I. Singleton, M. Goodfellow and S.-T. Lee. Enhanced biodegradation of diesel oil by a newly identified Rhodococcus baikonurensis EN3 in the presence of mycolic acid. J. Appl. Microbiol., 100, 325–333 (2006).
Lee M., M.K. Kim, M.J. Kwon, B.D. Park, M.H. Kim, M. Goodfellow and S.T. Lee: Effect of the synthesized mycolic acid on the biodegradation of diesel oil by Gordonia nitida strain LE31. J. Biosci. Bioeng., 100(4), 429-436 (2005).
Margesin, R.: Potential of cold-adapted microorganisms for bioremediation of oil-polluted Alpine soils. Int. Biodeterior. Biodegrad., 46, 3-10 (2000).
MaÌrquez-Rocha, F.J., J. Olmos-Soto, M. ConcepcioÌn Rosano-HernaÌndez and M. Muriel-GarciÌa: Determination of the hydrocarbon-degrading metabolic capabilities of tropical bacterial isolates. Int. Biodeterior. Biodegrad., 55, 17-23 (2005).
Rahman M.F.A., Shukor, M.Y., Z. Suhaili, S. Mustafa, N.A. Shamaan and M. A. Syed. 2009. Reduction of Mo(VI) by the bacterium Serratia sp. strain DRY5. Journal of Environmental Biology. 30(1).In Press.
Michaud, L., F. Di Cello, M. Brilli, R. Fani, A.L. Giudice and V. Bruni: Biodiversity of cultivable Antarctic psychrotrophic marine bacteria isolated from Terra Nova Bay (Ross Sea). FEMS Microbiol. Lett., 230, 63-71 (2004).
Mohammed, D., A. Ramsubhag and D.M. Beckles: An assessment of the biodegradation of petroleum hydrocarbons in contaminated soil using non-indigenous, commercial microbes. Water, Air, Soil Poll., 182(1-4), 349-356 (2007).
Mukherji S., S. Jagadevan, G. Mohapatra and A. Vijay: Biodegradation of diesel oil by an Arabian Sea sediment culture isolated from the vicinity of an oil field. Bioresource Technol., 95, 281–286 (2004).
Page, R.D.M.: TREEVIEW, an application to display phylogenetic trees on personal computers. Computer. Appl. Biosci., 12, 357–358 (1996).
Petrikevich, S.B., E.N. Kobzev and A.N. Shkidchenko: Estimation of the hydrocarbon-oxidizing activity of microorganisms. Appl. Biochem. Microbiol., 301, 19-23 (2003).
Rajasekar A., T.G. Babu, S.T. Pandian, S. Maruthamuthu, N. Palaniswamy and A. Rajendran: Role of Serratia marcescens ACE2 on diesel degradation and its influence on corrosion. J. Ind. Microbiol. Biotechnol., 34(9), 589-598 (2007).
Saitou, N. and M. Nei: The neighbor-joining method, a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425 (1987).
Sinnakkannu, S., A.R. Abdullah, N.M. Tahir and M.R. Abas: Degradation of metsulfuron methyl in selected Malaysian agricultural soils. Fresenius Environ. Bull., 13(3), 258-261 (2004).
The New Straits Times: Oil Spill closes road for six hours. 3 February (2000).
The new Straits Times: Tenaga Nasional Moves Quickly to Avert Disaster after Diesel Spill. 23rd May (2001).
Thompson, J.D., D.G. Higgins and T.J. Gibson: CLUSTAL W, Improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673–4680 (1994).
Ueno A., Y. Ito, I. Yumoto and H. Okuyama: Isolation and characterization of bacteria from soil contaminated with diesel oil and the possible use of these in autochthonous bioaugmentation. World J. Microbiol. Biotechnol., 23, 1739–1745(2007).
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