3D Protein Structure Prediction of Rhodococcus UKMP-5M Phenol Hydroxylase Using Homology Modelling

Authors

  • Nor Suhaila Yaakob
  • Hasdianty Abdullah Faculty of Science and Biotechnology, Universiti Selangor, Jalan Timur Tambahan, 45600 Bestari Jaya, Selangor
  • Rosfarizan Mohamad Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
  • Abdul Latif Ibrahim Institute of Bio-IT Selangor, Universiti Selangor, Jalan Zirkon A7/A, Seksyen 7, 40000 Shah Alam, Selangor
  • Arbakariya Ariff Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia

DOI:

https://doi.org/10.54987/bstr.v2i1.58

Keywords:

Rhodococcus UKMP-5M, phenol hydroxylase; Blastp; 3D structure; ProQ

Abstract

The Swiss-prot data-base was used for the protein sequence of Rhodococcus UKMP-5M. BlastP was used to determine the suitable template for homology modelling. Swiss Model is the homology modelling software was used to determine the 3D structure which passed the ProQ quality test for further analysis. Validation result for the predicted structure of Rhodococcus UKMP-5M, in which the prediction structure has passed the validation test with 5.951 Lgscore. This is lies in the range of extremely good model and 0.514 MaxSub which is lies in the range of very good model.

 

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Published

2014-07-20

How to Cite

Yaakob, N. S., Abdullah, H., Mohamad, R., Ibrahim, A. L., & Ariff, A. (2014). 3D Protein Structure Prediction of Rhodococcus UKMP-5M Phenol Hydroxylase Using Homology Modelling. Bioremediation Science and Technology Research (e-ISSN 2289-5892), 2(1), 1–4. https://doi.org/10.54987/bstr.v2i1.58

Issue

Vol. 2 No. 1 (2014)

Section

Articles

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